Get started

Welcome to scTriangulate documentation and tutorials website. Please follow the links below:

1. What is scTriangulate?

2. Single-Modality (scRNA-Seq) workflow

3. Multi-modal workflow

4. Visualization

Note

Please feel free to reach out to me [Contact] or create an issue if you encounter any questions, I will be responsive!

Contents

• Get Started
• Installation
• Introduction
  • What is scTriangulate?
  • Inputs and Outputs
• Tutorial
  • Single-Modality (scRNA-Seq) workflow
  • Multi-modal workflow
• Principle
  • ScTriangulate Object
  • Visualization
• API
  • ScTriangulate Class Methods
  • Preprocessing Module
  • Colors Module
  • Spatial (Experimental)
• Troubleshooting
  • Error getting the Enrichr libraries
  • Job killed or halted because reaching the maximum RAM
  • Compute TFIDF on integrated expression matrix (with negative value)
  • How is confidence score computed?
• Change Log
  • Version 0.13.0 2023/07/21
  • Version 0.12.0 2022/09/13
  • Version 0.10.1 2022/01/07
  • Version 0.9.2 2021/10/23
  • Version 0.9.1 2021/10/10
  • Version 0.9.0 2021/10/05
• Contact