Change Log

Version 0.13.0 2023/07/21

Since publication, I made a few minor bug fixes based on the feedback, including:

  • Windows user’s feedback on path delimiter difference

  • some newly added argument in preprocessing module

main functionalities remain intact, but the update will help the wide usage for other convenient functions

Version 0.12.0 2022/09/13

  • Adding sctriangulate.spatial module

  • Adding different mode for computing annotation importance including ranking-based method

  • Adding elo_rating for computing the overall quality score for each annotation

  • Adding logger module for proper and clean logging

  • streamlined the API to make it easy to understand and run, no need to dig into low-level implementation

  • flexibly adding new metrics and callable

  • Allowing specifying number of cores to use

  • Allowing easily output stability scores

  • fix bugs in the code and doc

Version 0.10.1 2022/01/07

  1. Feature Enhancement:

    • Neighborhood Components Analysis (supervised PCA embedding)

    • Coexpression plot

    • Sankey plot

    • Now supports for single-cell splicing data and single-cell mutation data multimodal analysis

    • Can visualize as many as 433 single cell clusters

    • color module support colorful stdout

  2. polish the documentation and fix bugs

Version 0.9.2 2021/10/23

  1. Feature Enhancement Add Build_custom_continous_cmap() and Build_custom_divergent_cmap() function

  2. Polish the documentation and fix and typos

Version 0.9.1 2021/10/10

  1. Add the option for whether assessing the raw cluster or not.

  2. Polish the documentation and fix some typos

Version 0.9.0 2021/10/05

  1. First public version.